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The default markdown result format goes through pandas, which misbehaves on Windows here. Two workarounds, both verified by the reporter:
uvx mcp-server-motherduck --db-path :memory: --result-format duckboxduckbox keeps the datatype info with limited output, or --result-format text if you dont need column headers. The maintainer confirmed the underlying issue was the pandas dependency and shipped 0.5.1, which he said should solve it.
Source: https://github.com/motherduckdb/mcp-server-motherduck/issues/19
Source: https://github.com/motherduckdb/mcp-server-motherduck/issues/19