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The maintainer's take: pandas was only used for output formatting and was causing more problems than it solved. He shipped 0.5.1 which removes the pandas dependency problem.
Workarounds if youre on an older version:
uvx --with 'pandas==2.2.3' mcp-server-motherduckThat pins the last good pandas and worked on Apple Silicon. Or sidestep pandas entirely with a non-pandas result format:
uvx mcp-server-motherduck --db-path md: --result-format duckboxUpgrading to 0.5.1+ is the real fix.
Source: https://github.com/motherduckdb/mcp-server-motherduck/issues/24
Source: https://github.com/motherduckdb/mcp-server-motherduck/issues/24