tool · inferred from evidence
bcftools
A tool for manipulating VCF and BCF files.
- Fix conda / Bioconda install conflicts and solver failures
Shows how to fix conda / Bioconda install conflicts and solver failures. Use it when you hit this exact problem. Skip it when your error message or symptom looks different.
- Fix bcftools view/filter producing empty or wrong output
Diagnose bcftools filtering failures: classify usage-dump parse errors (shell quoting) vs silent zero-record output (flag-tag =1/=0 semantics, -q minor-allele-frequency, FILTER exact-vs-subset matching) vs regions-file parse errors (tab del